Vollantrag zu Population Genetics
Vollantrag zu Population Genetics
Wissenschaftsdisziplinen
Biologie (75%); Mathematik (25%)
Keywords
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Speciation,
Hybridization,
Gene flow,
Selection,
Next Generation Sequenzing
Mittlerweile ist es klar, dass natürlich vorkommende DNA-Sequenz und Proteinvarianten von funktioneller Bedeutung sind. Daher wurden bereits mehrere Genomprojekte initiiert, die die Variabilitätsmuster in natürlichen Populationen untersuchen. In Österreich ist allerdings die wachsende Bedeutung der Populationsgenetik noch nicht in die universitäre Ausbildung eingeflossen. Das beantragte Doktoratskolleg (DK) zielt darauf ab diese Situation zu ändern. Im beantragten DK sind mehrere Wissenschaftsdisziplinen vertreten: theoretische Populationsgenetik, experimentelle Populationsgenetik, Entwicklungsgenetik und Statistik. Durch diese Breite der beteiligten Gruppen ist es dem DK nicht nur möglich eine ausgezeichnete Lehr-platform zu bieten, sondern auch die Lücke zwischen theoretischer und experimenteller Populationsgenetik zu schliessen
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Konsortiumsmitglied (15.07.2010 - 14.07.2024)
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Konsortiumsmitglied (15.07.2010 - 14.07.2024)
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Konsortiumsmitglied (15.07.2010 - 14.07.2024)
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Konsortiumsmitglied (15.07.2010 - 14.07.2024)
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Konsortiumsmitglied (15.07.2010 - 14.07.2024)
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Konsortiumsmitglied (15.07.2010 - 14.07.2024)
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Konsortiumsmitglied (15.07.2010 - 14.07.2024)
- Veterinärmedizinische Universität Wien
- Universität Wien
- Gregor Mendel Institute of Molecular Plant Biology
- Universität Wien
- Magnus Nordborg, Gregor Mendel Institute of Molecular Plant Biology , assoziierte:r Forschungspartner:in
- Joachim Hermisson, Universität Wien , assoziierte:r Forschungspartner:in
Research Output
- 12093 Zitationen
- 194 Publikationen
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2013
Titel The first whole genome sequence of a Fowl adenovirus B strain enables interspecies comparisons within the genus Aviadenovirus DOI 10.1016/j.vetmic.2013.05.017 Typ Journal Article Autor Marek A Journal Veterinary Microbiology Seiten 250-256 -
2012
Titel Evaluation of Different Reference Based Annotation Strategies Using RNA-Seq – A Case Study in Drososphila pseudoobscura DOI 10.1371/journal.pone.0046415 Typ Journal Article Autor Palmieri N Journal PLoS ONE Link Publikation -
2012
Titel Evolution of Eye Morphology and Rhodopsin Expression in the Drosophila melanogaster Species Subgroup DOI 10.1371/journal.pone.0037346 Typ Journal Article Autor Posnien N Journal PLoS ONE Link Publikation -
2012
Titel The allele-frequency spectrum in a decoupled Moran model with mutation, drift, and directional selection, assuming small mutation rates DOI 10.1016/j.tpb.2012.01.001 Typ Journal Article Autor Vogl C Journal Theoretical Population Biology Seiten 197-209 Link Publikation -
2012
Titel The Limits to Parapatric Speciation: Dobzhansky–Muller Incompatibilities in a Continent–Island Model DOI 10.1534/genetics.111.137513 Typ Journal Article Autor Bank C Journal Genetics Seiten 845-863 Link Publikation -
2012
Titel Unconstrained evolution in short introns? – An analysis of genome-wide polymorphism and divergence data from Drosophila DOI 10.1111/j.1420-9101.2012.02580.x Typ Journal Article Autor Clemente F Journal Journal of Evolutionary Biology Seiten 1975-1990 Link Publikation -
2012
Titel Detecting Selective Sweeps from Pooled Next-Generation Sequencing Samples DOI 10.1093/molbev/mss090 Typ Journal Article Autor Boitard S Journal Molecular Biology and Evolution Seiten 2177-2186 Link Publikation -
2012
Titel Genome-wide patterns of latitudinal differentiation among populations of Drosophila melanogaster from North America DOI 10.1111/j.1365-294x.2012.05731.x Typ Journal Article Autor Fabian D Journal Molecular Ecology Seiten 4748-4769 Link Publikation -
2019
Titel Low concordance of short-term and long-term selection responses in experimental Drosophila populations DOI 10.1101/759704 Typ Preprint Autor Langmüller A Seiten 759704 Link Publikation -
2018
Titel Asian horses deepen the MSY phylogeny DOI 10.1111/age.12635 Typ Journal Article Autor Felkel S Journal Animal Genetics Seiten 90-93 -
2018
Titel Evolution of longevity improves immunity in Drosophila DOI 10.1002/evl3.89 Typ Journal Article Autor Fabian D Journal Evolution Letters Seiten 567-579 Link Publikation -
2018
Titel Redefining reproductive dormancy in Drosophila as a general stress response to cold temperatures DOI 10.1016/j.jinsphys.2018.04.006 Typ Journal Article Autor Lirakis M Journal Journal of Insect Physiology Seiten 175-185 Link Publikation -
2018
Titel MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies DOI 10.1371/journal.pcbi.1006413 Typ Journal Article Autor Vlachos C Journal PLOS Computational Biology Link Publikation -
2016
Titel The Interplay of Temperature and Genotype on Patterns of Alternative Splicing in Drosophila melanogaster DOI 10.1534/genetics.116.192310 Typ Journal Article Autor Jakšic A Journal Genetics Seiten 315-325 Link Publikation -
2016
Titel An alternative derivation of the stationary distribution of the multivariate neutral Wright–Fisher model for low mutation rates with a view to mutation rate estimation from site frequency data DOI 10.1016/j.tpb.2016.12.001 Typ Journal Article Autor Schrempf D Journal Theoretical Population Biology Seiten 88-94 Link Publikation -
2016
Titel 1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana DOI 10.1016/j.cell.2016.05.063 Typ Journal Article Autor Consortium T Journal Cell Seiten 481-491 Link Publikation -
2016
Titel Suitability of Different Mapping Algorithms for Genome-Wide Polymorphism Scans with Pool-Seq Data DOI 10.1534/g3.116.034488 Typ Journal Article Autor Kofler R Journal G3: Genes, Genomes, Genetics Seiten 3507-3515 Link Publikation -
2016
Titel Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions DOI 10.1016/j.cell.2016.06.044 Typ Journal Article Autor Kawakatsu T Journal Cell Seiten 492-505 Link Publikation -
2016
Titel Secondary contact and local adaptation contribute to genome-wide patterns of clinal variation in Drosophila melanogaster DOI 10.1111/mec.13455 Typ Journal Article Autor Bergland A Journal Molecular Ecology Seiten 1157-1174 Link Publikation -
2016
Titel Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism DOI 10.1038/ng.3617 Typ Journal Article Autor Novikova P Journal Nature Genetics Seiten 1077-1082 Link Publikation -
2014
Titel Adaptive gene introgression after secondary contact DOI 10.1007/s00285-014-0802-y Typ Journal Article Autor Uecker H Journal Journal of Mathematical Biology Seiten 1523-1580 Link Publikation -
2014
Titel Clines in quantitative traits: The role of migration patterns and selection scenarios DOI 10.1016/j.tpb.2014.10.006 Typ Journal Article Autor Geroldinger L Journal Theoretical Population Biology Seiten 43-66 Link Publikation -
2014
Titel Experimental evolution reveals habitat-specific fitness dynamics among Wolbachia clades in Drosophila melanogaster DOI 10.1111/mec.12643 Typ Journal Article Autor Versace E Journal Molecular Ecology Seiten 802-814 Link Publikation -
2013
Titel The consequences of gene flow for local adaptation and differentiation: a two-locus two-deme model DOI 10.1007/s00285-013-0660-z Typ Journal Article Autor Akerman A Journal Journal of Mathematical Biology Seiten 1135-1198 Link Publikation -
2013
Titel Intra-Specific Regulatory Variation in Drosophila pseudoobscura DOI 10.1371/journal.pone.0083547 Typ Journal Article Autor Suvorov A Journal PLoS ONE Link Publikation -
2012
Titel Adaptation of Drosophila to a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles DOI 10.1111/j.1365-294x.2012.05673.x Typ Journal Article Autor Orozco-Terwengel P Journal Molecular Ecology Seiten 4931-4941 Link Publikation -
2012
Titel Evidence for complex selection on four-fold degenerate sites in Drosophila melanogaster DOI 10.1111/jeb.12003 Typ Journal Article Autor Clemente F Journal Journal of Evolutionary Biology Seiten 2582-2595 Link Publikation -
2012
Titel Estimating Empirical Codon Hidden Markov Models DOI 10.1093/molbev/mss266 Typ Journal Article Autor De Maio N Journal Molecular Biology and Evolution Seiten 725-736 Link Publikation -
2011
Titel The genomic and physiological basis of life history variation in a butterfly metapopulation DOI 10.1111/j.1365-294x.2011.05078.x Typ Journal Article Autor Klepsatel P Journal Molecular Ecology Seiten 1795-1798 Link Publikation -
2011
Titel Distinguishing Positive Selection From Neutral Evolution: Boosting the Performance of Summary Statistics DOI 10.1534/genetics.110.122614 Typ Journal Article Autor Lin K Journal Genetics Seiten 229-244 Link Publikation -
2011
Titel CAN REINFORCEMENT COMPLETE SPECIATION? DOI 10.1111/j.1558-5646.2011.01423.x Typ Journal Article Autor Bank C Journal Evolution Seiten 229-239 Link Publikation -
2013
Titel Pool-hmm: a Python program for estimating the allele frequency spectrum and detecting selective sweeps from next generation sequencing of pooled samples DOI 10.1111/1755-0998.12063 Typ Journal Article Autor Boitard S Journal Molecular Ecology Resources Seiten 337-340 Link Publikation -
2013
Titel Reproductive and post-reproductive life history of wild-caught Drosophila melanogaster under laboratory conditions DOI 10.1111/jeb.12155 Typ Journal Article Autor Klepsatel P Journal Journal of Evolutionary Biology Seiten 1508-1520 -
2013
Titel Massive Habitat-Specific Genomic Response in D. melanogaster Populations during Experimental Evolution in Hot and Cold Environments DOI 10.1093/molbev/mst205 Typ Journal Article Autor Tobler R Journal Molecular Biology and Evolution Seiten 364-375 Link Publikation -
2010
Titel Transcriptome analysis reveals a major impact of JAK protein tyrosine kinase 2 (Tyk2) on the expression of interferon-responsive and metabolic genes DOI 10.1186/1471-2164-11-199 Typ Journal Article Autor Vogl C Journal BMC Genomics Seiten 199 Link Publikation -
2010
Titel Host Range and Specificity of the Drosophila C Virus DOI 10.1371/journal.pone.0012421 Typ Journal Article Autor Kapun M Journal PLoS ONE Link Publikation -
2010
Titel Conservation, loss, and redeployment of Wnt ligands in protostomes: implications for understanding the evolution of segment formation DOI 10.1186/1471-2148-10-374 Typ Journal Article Autor Janssen R Journal BMC Evolutionary Biology Seiten 374 Link Publikation -
2010
Titel The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples DOI 10.1534/genetics.110.114397 Typ Journal Article Autor Futschik A Journal Genetics Seiten 207-218 Link Publikation -
2021
Titel Highly parallel genomic selection response in replicated Drosophila melanogaster populations with reduced genetic variation DOI 10.1101/2021.04.06.438598 Typ Preprint Autor Claire B Seiten 2021.04.06.438598 Link Publikation -
2023
Titel Evolution of Metabolome and Transcriptome Supports a Hierarchical Organization of Adaptive Traits DOI 10.1093/gbe/evad098 Typ Journal Article Autor Lai W Journal Genome Biology and Evolution Link Publikation -
2023
Titel Effects of larval crowding on the transcriptome of Drosophila simulans DOI 10.1111/eva.13592 Typ Journal Article Autor Buchner S Journal Evolutionary Applications Seiten 1671-1679 Link Publikation -
2021
Titel Evolutionary dynamics of piRNA clusters in Drosophila DOI 10.1101/2021.08.20.457083 Typ Preprint Autor Wierzbicki F Seiten 2021.08.20.457083 Link Publikation -
2021
Titel Recurrent allopolyploidization events diversify eco-physiological traits in marsh orchids DOI 10.1101/2021.08.28.458039 Typ Preprint Autor Wolfe T Seiten 2021.08.28.458039 Link Publikation -
2021
Titel Evolution of phenotypic variance in response to a novel hot environment DOI 10.1101/2021.01.19.427270 Typ Preprint Autor Lai W Seiten 2021.01.19.427270 Link Publikation -
2024
Titel Small RNAs regulation and genomic harmony: insights into allopolyploid evolution in marsh orchids (Dactylorhiza) DOI 10.1101/2024.11.29.626004 Typ Preprint Autor Eriksson M Seiten 2024.11.29.626004 Link Publikation -
2024
Titel The global spread of Oriental Horses in the past 1,500 years through the lens of the Y chromosome DOI 10.1073/pnas.2414408121 Typ Journal Article Autor Radovic L Journal Proceedings of the National Academy of Sciences Link Publikation -
2024
Titel Purifying Selection Shapes the Dynamics of P-element Invasion in Drosophila simulans Populations DOI 10.1101/2024.12.17.628872 Typ Preprint Autor Langmüller A Seiten 2024.12.17.628872 Link Publikation -
2024
Titel Inferences about the population history of Rangifer tarandus from Y chromosome and mtDNA phylogenies DOI 10.1002/ece3.11573 Typ Journal Article Autor Bozlak E Journal Ecology and Evolution Link Publikation -
2024
Titel From whole bodies to single cells: A guide to transcriptomic approaches for ecology and evolutionary biology DOI 10.1111/mec.17382 Typ Journal Article Autor Hoedjes K Journal Molecular Ecology Link Publikation -
2024
Titel Pleiotropy increases parallel selection signatures during adaptation from standing genetic variation DOI 10.1101/2024.08.06.606803 Typ Preprint Autor Lai W Seiten 2024.08.06.606803 Link Publikation -
2023
Titel Non-additive effects between genotypes: Implications for competitive fitness assays DOI 10.1002/ece3.10713 Typ Journal Article Autor Xiao C Journal Ecology and Evolution Link Publikation -
2023
Titel Recurrent allopolyploidizations diversify ecophysiological traits in marsh orchids (Dactylorhiza majalis s.l.) DOI 10.1111/mec.17070 Typ Journal Article Autor Wolfe T Journal Molecular Ecology Seiten 4777-4790 Link Publikation -
2023
Titel The composition of piRNA clusters in Drosophila melanogaster deviates from expectations under the trap model DOI 10.1186/s12915-023-01727-7 Typ Journal Article Autor Wierzbicki F Journal BMC Biology Seiten 224 Link Publikation -
2023
Titel Haplotype based testing for a better understanding of the selective architecture DOI 10.1186/s12859-023-05437-3 Typ Journal Article Autor Chen H Journal BMC Bioinformatics Seiten 322 Link Publikation -
2023
Titel The genomic distribution of transposable elements is driven by spatially variable purifying selection DOI 10.1093/nar/gkad635 Typ Journal Article Autor Langmüller A Journal Nucleic Acids Research Seiten 9203-9213 Link Publikation -
2023
Titel Purifying selection against spurious splicing signals contributes to the base composition evolution of the polypyrimidine tract DOI 10.1111/jeb.14205 Typ Journal Article Autor Yildirim B Journal Journal of Evolutionary Biology Seiten 1295-1312 Link Publikation -
2023
Titel Unraveling the Molecular Basis of Stabilizing Selection by Experimental Evolution DOI 10.1093/gbe/evad220 Typ Journal Article Autor Schlötterer C Journal Genome Biology and Evolution Link Publikation -
2023
Titel Inference of Genomic Landscapes using Ordered Hidden Markov Models with Emission Densities (oHMMed) DOI 10.1101/2023.06.26.546495 Typ Preprint Autor Vogl C Seiten 2023.06.26.546495 Link Publikation -
2023
Titel Refining the evolutionary tree of the horse Y chromosome DOI 10.1038/s41598-023-35539-0 Typ Journal Article Autor Bozlak E Journal Scientific Reports Seiten 8954 Link Publikation -
2020
Titel Loss of genetic variation in the two-locus multiallelic haploid model DOI 10.1016/j.tpb.2020.10.001 Typ Journal Article Autor Pontz M Journal Theoretical Population Biology Seiten 12-21 Link Publikation -
2020
Titel Reconstructing the Invasion Route of the P-Element in Drosophila melanogaster Using Extant Population Samples DOI 10.1093/gbe/evaa190 Typ Journal Article Autor Weilguny L Journal Genome Biology and Evolution Seiten 2139-2152 Link Publikation -
2020
Titel Arabidopsis shoot stem cells display dynamic transcription and DNA methylation patterns DOI 10.15252/embj.2019103667 Typ Journal Article Autor Gutzat R Journal The EMBO Journal Link Publikation -
2020
Titel Parallel gene expression evolution in natural and laboratory evolved populations DOI 10.1111/mec.15649 Typ Journal Article Autor Hsu S Journal Molecular Ecology Seiten 884-894 Link Publikation -
2020
Titel Long-Term Dynamics Among Wolbachia Strains During Thermal Adaptation of Their Drosophila melanogaster Hosts DOI 10.3389/fgene.2020.00482 Typ Journal Article Autor Mazzucco R Journal Frontiers in Genetics Seiten 482 Link Publikation -
2021
Titel Novel quality metrics allow identifying and generating high-quality assemblies of piRNA clusters DOI 10.1111/1755-0998.13455 Typ Journal Article Autor Wierzbicki F Journal Molecular Ecology Resources Seiten 102-121 Link Publikation -
2020
Titel Current research frontiers in plant epigenetics: an introduction to a Virtual Issue DOI 10.1111/nph.16493 Typ Journal Article Autor Eriksson M Journal New Phytologist Seiten 285-288 Link Publikation -
2020
Titel Generating high quality assemblies for genomic analysis of transposable elements DOI 10.1101/2020.03.27.011312 Typ Preprint Autor Wierzbicki F Seiten 2020.03.27.011312 Link Publikation -
2020
Titel Transcription-coupled repair in Drosophila melanogaster is independent of the mismatch repair pathway DOI 10.1101/2020.04.07.029033 Typ Preprint Autor Törmä L Seiten 2020.04.07.029033 Link Publikation -
2020
Titel Tirant Stealthily Invaded Natural Drosophila melanogaster Populations during the Last Century DOI 10.1093/molbev/msaa308 Typ Journal Article Autor Schwarz F Journal Molecular Biology and Evolution Seiten 1482-1497 Link Publikation -
2019
Titel Polygenic adaptation: From sweeps to subtle frequency shifts DOI 10.1371/journal.pgen.1008035 Typ Journal Article Autor Höllinger I Journal PLOS Genetics Link Publikation -
2019
Titel Benchmarking software tools for detecting and quantifying selection in Evolve and Resequencing studies DOI 10.1101/641852 Typ Preprint Autor Vlachos C Seiten 641852 Link Publikation -
2019
Titel A First Y-Chromosomal Haplotype Network to Investigate Male-Driven Population Dynamics in Domestic and Wild Bactrian Camels DOI 10.3389/fgene.2019.00423 Typ Journal Article Autor Felkel S Journal Frontiers in Genetics Seiten 423 Link Publikation -
2019
Titel Does Adaptive Protein Evolution Proceed by Large or Small Steps at the Amino Acid Level? DOI 10.1093/molbev/msz033 Typ Journal Article Autor Bergman J Journal Molecular Biology and Evolution Seiten 990-998 Link Publikation -
2019
Titel Maximum Likelihood Estimation of Fitness Components in Experimental Evolution DOI 10.1534/genetics.118.301893 Typ Journal Article Autor Liu J Journal Genetics Seiten 1005-1017 Link Publikation -
2019
Titel LDJump: Estimating variable recombination rates from population genetic data DOI 10.1111/1755-0998.12994 Typ Journal Article Autor Hermann P Journal Molecular Ecology Resources Seiten 623-638 Link Publikation -
2019
Titel Genetic redundancy fuels polygenic adaptation in Drosophila DOI 10.1371/journal.pbio.3000128 Typ Journal Article Autor Barghi N Journal PLOS Biology Link Publikation -
2019
Titel A 24 h Age Difference Causes Twice as Much Gene Expression Divergence as 100 Generations of Adaptation to a Novel Environment DOI 10.3390/genes10020089 Typ Journal Article Autor Hsu S Journal Genes Seiten 89 Link Publikation -
2019
Titel The comparative genomics and complex population history of Papio baboons DOI 10.1126/sciadv.aau6947 Typ Journal Article Autor Rogers J Journal Science Advances Link Publikation -
2019
Titel Does experimental evolution produce better biological control agents? A critical review of the evidence DOI 10.1111/eea.12815 Typ Journal Article Autor Lirakis M Journal Entomologia Experimentalis et Applicata Seiten 584-597 Link Publikation -
2019
Titel Secondary evolve and re-sequencing: an experimental confirmation of putative selection targets without phenotyping DOI 10.1101/722488 Typ Preprint Autor Burny C Seiten 722488 Link Publikation -
2019
Titel A clinal polymorphism in the insulin signaling transcription factor foxo contributes to life-history adaptation in Drosophila* DOI 10.1111/evo.13759 Typ Journal Article Autor Durmaz E Journal Evolution Seiten 1774-1792 Link Publikation -
2019
Titel The Aquilegia genome reveals a hybrid origin of core eudicots DOI 10.1186/s13059-019-1888-8 Typ Journal Article Autor Aköz G Journal Genome Biology Seiten 256 Link Publikation -
2019
Titel The horse Y chromosome as an informative marker for tracing sire lines DOI 10.1038/s41598-019-42640-w Typ Journal Article Autor Felkel S Journal Scientific Reports Seiten 6095 Link Publikation -
2019
Titel DNA Motifs Are Not General Predictors of Recombination in Two Drosophila Sister Species DOI 10.1093/gbe/evz082 Typ Journal Article Autor Howie J Journal Genome Biology and Evolution Seiten 1345-1357 Link Publikation -
2022
Titel Parallel adaptation to lower altitudes is associated with enhanced plasticity in Heliosperma pusillum (Caryophyllaceae) DOI 10.1101/2022.05.28.493825 Typ Preprint Autor Szukala A Seiten 2022.05.28.493825 Link Publikation -
2022
Titel Natural variation in Drosophila shows weak pleiotropic effects DOI 10.1186/s13059-022-02680-4 Typ Journal Article Autor Christodoulaki E Journal Genome Biology Seiten 116 Link Publikation -
2022
Titel Pool-GWAS on reproductive dormancy in Drosophila simulans suggests a polygenic architecture DOI 10.1093/g3journal/jkac027 Typ Journal Article Autor Lirakis M Journal G3 Link Publikation -
2022
Titel Purifying selection against spurious splicing signals contributes to the base composition evolution of the polypyrimidine tract DOI 10.1101/2022.01.29.478184 Typ Preprint Autor Yildirim B Seiten 2022.01.29.478184 Link Publikation -
2022
Titel Y-Chromosomal Insights into Breeding History and Sire Line Genealogies of Arabian Horses DOI 10.3390/genes13020229 Typ Journal Article Autor Remer V Journal Genes Seiten 229 Link Publikation -
2022
Titel A homing suppression gene drive with multiplexed gRNAs maintains high drive conversion efficiency and avoids functional resistance alleles DOI 10.1093/g3journal/jkac081 Typ Journal Article Autor Yang E Journal G3 Link Publikation -
2019
Titel Benchmarking software tools for detecting and quantifying selection in evolve and resequencing studies DOI 10.1186/s13059-019-1770-8 Typ Journal Article Autor Vlachos C Journal Genome Biology Seiten 169 Link Publikation -
2019
Titel Optimizing the Power to Identify the Genetic Basis of Complex Traits with Evolve and Resequence Studies DOI 10.1093/molbev/msz183 Typ Journal Article Autor Vlachos C Journal Molecular Biology and Evolution Seiten 2890-2905 Link Publikation -
2021
Titel Single-particle tracking photoactivated localization microscopy of membrane proteins in living plant tissues DOI 10.1038/s41596-020-00471-4 Typ Journal Article Autor Bayle V Journal Nature Protocols Seiten 1600-1628 -
2021
Titel Highly Parallel Genomic Selection Response in Replicated Drosophila melanogaster Populations with Reduced Genetic Variation DOI 10.1093/gbe/evab239 Typ Journal Article Autor Burny C Journal Genome Biology and Evolution Link Publikation -
2021
Titel Taxon-specific or universal? Using target capture to study the evolutionary history of rapid radiations DOI 10.1101/2021.05.20.444989 Typ Preprint Autor Yardeni G Seiten 2021.05.20.444989 Link Publikation -
2021
Titel 38??Y chromosome genetic variation and deep genealogies provide new insights on Lipizzan sire lines DOI 10.1016/j.jevs.2021.103501 Typ Journal Article Autor Radovic L Journal Journal of Equine Veterinary Science Seiten 103501 -
2021
Titel Fine Mapping without Phenotyping: Identification of Selection Targets in Secondary Evolve and Resequence Experiments DOI 10.1093/gbe/evab154 Typ Journal Article Autor Langmüller A Journal Genome Biology and Evolution Link Publikation -
2021
Titel Evolution of phenotypic variance in response to a novel hot environment DOI 10.1111/mec.16274 Typ Journal Article Autor Lai W Journal Molecular Ecology Seiten 934-945 Link Publikation -
2021
Titel Two different adaptive speciation mechanisms operate during adaptation to a novel hot environment DOI 10.1101/2021.11.08.467720 Typ Preprint Autor Hsu S Seiten 2021.11.08.467720 Link Publikation -
2021
Titel Genome-wide selection signatures reveal widespread synergistic effects of culture conditions and temperature stress in Drosophila melanogaster DOI 10.1101/2021.11.09.467935 Typ Preprint Autor Claire B Seiten 2021.11.09.467935 Link Publikation -
2021
Titel Drivers of genomic landscapes of differentiation across Populus divergence gradient DOI 10.1101/2021.08.26.457771 Typ Preprint Autor Shang H Seiten 2021.08.26.457771 Link Publikation -
2021
Titel The Contribution of Evolutionary Game Theory to Understanding and Treating Cancer DOI 10.1007/s13235-021-00397-w Typ Journal Article Autor Wölfl B Journal Dynamic Games and Applications Seiten 313-342 Link Publikation -
2021
Titel Evolution of phenotypic variance provides insights into the genetic basis of adaptation DOI 10.1101/2021.01.19.427260 Typ Preprint Autor Lai W Seiten 2021.01.19.427260 Link Publikation -
2021
Titel Fine mapping without phenotyping: Identification of selection targets in secondary Evolve and Resequence experiments DOI 10.1101/2021.01.27.428395 Typ Preprint Autor Langmüller A Seiten 2021.01.27.428395 Link Publikation -
2021
Titel Multiple haplotype reconstruction from allele frequency data DOI 10.1038/s43588-021-00056-5 Typ Journal Article Autor Pelizzola M Journal Nature Computational Science Seiten 262-271 Link Publikation -
2021
Titel A nearly-neutral biallelic Moran model with biased mutation and linear and quadratic selection DOI 10.1016/j.tpb.2021.03.003 Typ Journal Article Autor Vogl C Journal Theoretical Population Biology Seiten 1-17 Link Publikation -
2021
Titel Fitness effects of CRISPR endonucleases in Drosophila melanogaster populations DOI 10.1101/2021.05.13.444039 Typ Preprint Autor Langmüller A Seiten 2021.05.13.444039 Link Publikation -
2022
Titel Parallel reduction in flowering time from de novo mutations enable evolutionary rescue in colonizing lineages DOI 10.1038/s41467-022-28800-z Typ Journal Article Autor Fulgione A Journal Nature Communications Seiten 1461 Link Publikation -
2022
Titel Genome-wide selection signatures reveal widespread synergistic effects of two different stressors in Drosophila melanogaster DOI 10.1098/rspb.2022.1857 Typ Journal Article Autor Burny C Journal Proceedings of the Royal Society B Seiten 20221857 Link Publikation -
2022
Titel Polygenic routes lead to parallel altitudinal adaptation in Heliosperma pusillum (Caryophyllaceae) DOI 10.1111/mec.16393 Typ Journal Article Autor Szukala A Journal Molecular Ecology Seiten 1832-1847 Link Publikation -
2009
Titel Hidden Markov Models in Biology DOI 10.1007/978-1-60327-241-4_14 Typ Book Chapter Autor Vogl C Verlag Springer Nature Seiten 241-253 -
2017
Titel ReadTools: A universal toolkit for handling sequence data from different sequencing platforms DOI 10.1111/1755-0998.12741 Typ Journal Article Autor Gómez-Sánchez D Journal Molecular Ecology Resources Seiten 676-680 -
2017
Titel Genome Sequencing Reveals the Origin of the Allotetraploid Arabidopsis suecica DOI 10.1093/molbev/msw299 Typ Journal Article Autor Novikova P Journal Molecular Biology and Evolution Seiten 957-968 Link Publikation -
2017
Titel Exchange of genetic information between therian X and Y chromosome gametologs in old evolutionary strata DOI 10.1002/ece3.3278 Typ Journal Article Autor Peneder P Journal Ecology and Evolution Seiten 8478-8487 Link Publikation -
2017
Titel Drosophila simulans: A Species with Improved Resolution in Evolve and Resequence Studies DOI 10.1534/g3.117.043349 Typ Journal Article Autor Barghi N Journal G3: Genes, Genomes, Genetics Seiten 2337-2343 Link Publikation -
2017
Titel Evolutionary dynamics in the two-locus two-allele model with weak selection DOI 10.1007/s00285-017-1140-7 Typ Journal Article Autor Pontz M Journal Journal of Mathematical Biology Seiten 151-203 Link Publikation -
2017
Titel Approximate maximum likelihood estimation for population genetic inference DOI 10.1515/sagmb-2017-0016 Typ Journal Article Autor Bertl J Journal Statistical Applications in Genetics and Molecular Biology Seiten 291-312 Link Publikation -
2018
Titel Contesting the evidence for non-adaptive plasticity DOI 10.1038/nature25496 Typ Journal Article Autor Mallard F Journal Nature -
2017
Titel On the post-glacial spread of human commensal Arabidopsis thaliana DOI 10.1038/ncomms14458 Typ Journal Article Autor Lee C Journal Nature Communications Seiten 14458 Link Publikation -
2017
Titel African genomes illuminate the early history and transition to selfing in Arabidopsis thaliana DOI 10.1073/pnas.1616736114 Typ Journal Article Autor Durvasula A Journal Proceedings of the National Academy of Sciences Seiten 5213-5218 Link Publikation -
2017
Titel High rate of translocation-based gene birth on the Drosophila Y chromosome DOI 10.1073/pnas.1706502114 Typ Journal Article Autor Tobler R Journal Proceedings of the National Academy of Sciences Seiten 11721-11726 Link Publikation -
2017
Titel Bounds to parapatric speciation: A Dobzhansky–Muller incompatibility model involving autosomes, X chromosomes, and mitochondria DOI 10.1111/evo.13223 Typ Journal Article Autor Höllinger I Journal Evolution Seiten 1366-1380 Link Publikation -
2017
Titel Transcription-Associated Compositional Skews in Drosophila Genes DOI 10.1093/gbe/evx200 Typ Journal Article Autor Bergman J Journal Genome Biology and Evolution Seiten 269-275 Link Publikation -
2017
Titel A simple genetic basis of adaptation to a novel thermal environment results in complex metabolic rewiring in Drosophila DOI 10.1101/174011 Typ Preprint Autor Mallard F Seiten 174011 Link Publikation -
2017
Titel Unstable Inheritance of 45S rRNA Genes in Arabidopsis thaliana DOI 10.1534/g3.117.040204 Typ Journal Article Autor Rabanal F Journal G3: Genes, Genomes, Genetics Seiten 1201-1209 Link Publikation -
2017
Titel Inference in population genetics using forward and backward, discrete and continuous time processes DOI 10.1016/j.jtbi.2017.12.008 Typ Journal Article Autor Bergman J Journal Journal of Theoretical Biology Seiten 166-180 Link Publikation -
2017
Titel Verification of Arabidopsis stock collections using SNPmatch, a tool for genotyping high-plexed samples DOI 10.1038/sdata.2017.184 Typ Journal Article Autor Pisupati R Journal Scientific Data Seiten 170184 Link Publikation -
2017
Titel Plant genetic effects on microbial hubs impact fitness across field trials DOI 10.1101/181198 Typ Preprint Autor Brachi B Seiten 181198 Link Publikation -
2017
Titel Quantifying Selection with Pool-Seq Time Series Data DOI 10.1093/molbev/msx225 Typ Journal Article Autor Taus T Journal Molecular Biology and Evolution Seiten 3023-3034 Link Publikation -
2017
Titel Regulation of transposable elements: Interplay between TE-encoded regulatory sequences and host-specific trans-acting factors in Drosophila melanogaster DOI 10.1111/mec.14259 Typ Journal Article Autor Jakšic A Journal Molecular Ecology Seiten 5149-5159 -
2017
Titel Madeiran Arabidopsis thaliana Reveals Ancient Long-Range Colonization and Clarifies Demography in Eurasia DOI 10.1093/molbev/msx300 Typ Journal Article Autor Fulgione A Journal Molecular Biology and Evolution Seiten 564-574 Link Publikation -
2014
Titel Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation DOI 10.1038/hdy.2014.86 Typ Journal Article Autor Schlötterer C Journal Heredity Seiten 431-440 Link Publikation -
2014
Titel SNP2GO: Functional Analysis of Genome-Wide Association Studies DOI 10.1534/genetics.113.160341 Typ Journal Article Autor Szkiba D Journal Genetics Seiten 285-289 Link Publikation -
2014
Titel A two-locus model of spatially varying stabilizing or directional selection on a quantitative trait DOI 10.1016/j.tpb.2014.03.002 Typ Journal Article Autor Geroldinger L Journal Theoretical Population Biology Seiten 10-41 Link Publikation -
2014
Titel Patterns of Linkage Disequilibrium and Long Range Hitchhiking in Evolving Experimental Drosophila melanogaster Populations DOI 10.1093/molbev/msu320 Typ Journal Article Autor Franssen S Journal Molecular Biology and Evolution Seiten 495-509 Link Publikation -
2014
Titel The consequences of dominance and gene flow for local adaptation and differentiation at two linked loci DOI 10.1016/j.tpb.2014.04.001 Typ Journal Article Autor Akerman A Journal Theoretical Population Biology Seiten 42-62 Link Publikation -
2014
Titel Pool and conquer: new tricks for (c)old problems DOI 10.1111/mec.12685 Typ Journal Article Autor Navarro A Journal Molecular Ecology Seiten 1653-1655 Link Publikation -
2014
Titel Keeping It Local: Evidence for Positive Selection in Swedish Arabidopsis thaliana DOI 10.1093/molbev/msu247 Typ Journal Article Autor Huber C Journal Molecular Biology and Evolution Seiten 3026-3039 Link Publikation -
2014
Titel The life cycle of Drosophila orphan genes DOI 10.7554/elife.01311 Typ Journal Article Autor Palmieri N Journal eLife Link Publikation -
2017
Titel Adaptive sequence evolution is driven by biotic stress in a pair of orchid species (Dactylorhiza) with distinct ecological optima DOI 10.1111/mec.14123 Typ Journal Article Autor Balao F Journal Molecular Ecology Seiten 3649-3662 Link Publikation -
2016
Titel The Footprint of Polygenic Adaptation on Stress-Responsive Cis-Regulatory Divergence in the Arabidopsis Genus DOI 10.1093/molbev/msw096 Typ Journal Article Autor He F Journal Molecular Biology and Evolution Seiten 2088-2101 Link Publikation -
2016
Titel Suitability of different mapping algorithms for genome-wide polymorphism scans with Pool-Seq data DOI 10.1101/052845 Typ Preprint Autor Kofler R Seiten 052845 Link Publikation -
2016
Titel Improved Versions of Common Estimators of the Recombination Rate DOI 10.1089/cmb.2016.0039 Typ Journal Article Autor Gärtner K Journal Journal of Computational Biology Seiten 756-768 Link Publikation -
2016
Titel Estimating the Effective Population Size from Temporal Allele Frequency Changes in Experimental Evolution DOI 10.1534/genetics.116.191197 Typ Journal Article Autor Jónás Á Journal Genetics Seiten 723-735 Link Publikation -
2015
Titel Detecting recent selective sweeps while controlling for mutation rate and background selection DOI 10.1101/018697 Typ Preprint Autor Huber C Seiten 018697 Link Publikation -
2015
Titel PoMo: An Allele Frequency-Based Approach for Species Tree Estimation DOI 10.1093/sysbio/syv048 Typ Journal Article Autor De Maio N Journal Systematic Biology Seiten 1018-1031 Link Publikation -
2015
Titel Genes from scratch – the evolutionary fate of de novo genes DOI 10.1016/j.tig.2015.02.007 Typ Journal Article Autor Schlötterer C Journal Trends in Genetics Seiten 215-219 Link Publikation -
2020
Titel Evolution of strong reproductive isolation in plants: broad-scale patterns and lessons from a perennial model group. DOI 10.1098/rstb.2019.0544 Typ Journal Article Autor Shang H Journal Philosophical transactions of the Royal Society of London. Series B, Biological sciences Seiten 20190544 Link Publikation -
2020
Titel Next-generation biological control: the need for integrating genetics and genomics DOI 10.1111/brv.12641 Typ Journal Article Autor Leung K Journal Biological Reviews Seiten 1838-1854 Link Publikation -
2020
Titel Low concordance of short-term and long-term selection responses in experimental Drosophila populations DOI 10.1111/mec.15579 Typ Journal Article Autor Langmüller A Journal Molecular Ecology Seiten 3466-3475 Link Publikation -
2020
Titel Maximum likelihood estimators for scaled mutation rates in an equilibrium mutation–drift model DOI 10.1016/j.tpb.2020.06.001 Typ Journal Article Autor Vogl C Journal Theoretical Population Biology Seiten 106-118 -
2020
Titel VolcanoFinder: Genomic scans for adaptive introgression DOI 10.1371/journal.pgen.1008867 Typ Journal Article Autor Setter D Journal PLOS Genetics Link Publikation -
2020
Titel Tirant stealthily invaded natural Drosophila melanogaster populations during the last century DOI 10.1101/2020.06.10.144378 Typ Preprint Autor Schwarz F Seiten 2020.06.10.144378 Link Publikation -
2020
Titel Fitness effects for Ace insecticide resistance mutations are determined by ambient temperature DOI 10.1186/s12915-020-00882-5 Typ Journal Article Autor Langmüller A Journal BMC Biology Seiten 157 Link Publikation -
2020
Titel Secondary Evolve and Resequencing: An Experimental Confirmation of Putative Selection Targets without Phenotyping DOI 10.1093/gbe/evaa036 Typ Journal Article Autor Burny C Journal Genome Biology and Evolution Seiten 151-159 Link Publikation -
2020
Titel Loss of genetic variation in the two-locus multiallelic haploid model DOI 10.1101/2020.03.07.981852 Typ Preprint Autor Pontz M Seiten 2020.03.07.981852 Link Publikation -
2020
Titel Rapid sex-specific adaptation to high temperature in Drosophila DOI 10.7554/elife.53237 Typ Journal Article Autor Hsu S Journal eLife Link Publikation -
2020
Titel Neuronal Function and Dopamine Signaling Evolve at High Temperature in Drosophila DOI 10.1093/molbev/msaa116 Typ Journal Article Autor Jakšic A Journal Molecular Biology and Evolution Seiten 2630-2640 Link Publikation -
2020
Titel Modifying the Chi-square and the CMH test for population genetic inference: Adapting to overdispersion DOI 10.1214/19-aoas1301 Typ Journal Article Autor Spitzer K Journal The Annals of Applied Statistics Seiten 202-220 Link Publikation -
2020
Titel Reversed sex-biased mutation rates for indels and base substitutions in Drosophila melanogaster DOI 10.1101/2020.04.08.031336 Typ Preprint Autor Törmä L Seiten 2020.04.08.031336 Link Publikation -
2015
Titel Spatially varying selection shapes life history clines among populations of Drosophila melanogaster from sub-Saharan Africa DOI 10.1111/jeb.12607 Typ Journal Article Autor Fabian D Journal Journal of Evolutionary Biology Seiten 826-840 Link Publikation -
2015
Titel Inference of directional selection and mutation parameters assuming equilibrium DOI 10.1016/j.tpb.2015.10.003 Typ Journal Article Autor Vogl C Journal Theoretical Population Biology Seiten 71-82 -
2015
Titel Parallel trait adaptation across opposing thermal environments in experimental Drosophila melanogaster populations DOI 10.1111/evo.12705 Typ Journal Article Autor Tobler R Journal Evolution Seiten 1745-1759 Link Publikation -
2014
Titel SIMILARITIES AND DIFFERENCES IN ALTITUDINAL VERSUS LATITUDINAL VARIATION FOR MORPHOLOGICAL TRAITS IN DROSOPHILA MELANOGASTER DOI 10.1111/evo.12351 Typ Journal Article Autor Klepsatel P Journal Evolution Seiten 1385-1398 Link Publikation -
2014
Titel Sequencing pools of individuals — mining genome-wide polymorphism data without big funding DOI 10.1038/nrg3803 Typ Journal Article Autor Schlötterer C Journal Nature Reviews Genetics Seiten 749-763 -
2018
Titel Ancient genomes revisit the ancestry of domestic and Przewalski’s horses DOI 10.1126/science.aao3297 Typ Journal Article Autor Gaunitz C Journal Science Seiten 111-114 Link Publikation -
2015
Titel Detecting recent selective sweeps while controlling for mutation rate and background selection DOI 10.1111/mec.13351 Typ Journal Article Autor Huber C Journal Molecular Ecology Seiten 142-156 Link Publikation -
2015
Titel The impact of library preparation protocols on the consistency of allele frequency estimates in Pool-Seq data DOI 10.1111/1755-0998.12432 Typ Journal Article Autor Kofler R Journal Molecular Ecology Resources Seiten 118-122 Link Publikation -
2015
Titel Gaussian process test for high-throughput sequencing time series: application to experimental evolution DOI 10.1093/bioinformatics/btv014 Typ Journal Article Autor Topa H Journal Bioinformatics Seiten 1762-1770 Link Publikation -
2018
Titel Molecular dissection of a natural transposable element invasion DOI 10.1101/gr.228627.117 Typ Journal Article Autor Kofler R Journal Genome Research Seiten 824-835 Link Publikation -
2018
Titel A simple genetic basis of adaptation to a novel thermal environment results in complex metabolic rewiring in Drosophila DOI 10.1186/s13059-018-1503-4 Typ Journal Article Autor Mallard F Journal Genome Biology Seiten 119 Link Publikation -
2018
Titel DNA motifs are not general predictors of recombination in two Drosophila sister species DOI 10.1101/453639 Typ Preprint Autor Howie J Seiten 453639 Link Publikation -
2018
Titel The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history DOI 10.7554/elife.36426 Typ Journal Article Autor Filiault D Journal eLife Link Publikation -
2018
Titel Can secondary contact following range expansion be distinguished from barriers to gene flow? DOI 10.7717/peerj.5325 Typ Journal Article Autor Bertl J Journal PeerJ Link Publikation -
2018
Titel An omnibus test for the global null hypothesis DOI 10.1177/0962280218768326 Typ Journal Article Autor Futschik A Journal Statistical Methods in Medical Research Seiten 2292-2304 Link Publikation -
2010
Titel Steroid hormone regulation of C. elegans and Drosophila aging and life history DOI 10.1016/j.exger.2010.08.021 Typ Journal Article Autor Gáliková M Journal Experimental Gerontology Seiten 141-147 Link Publikation -
2009
Titel Detecting Selective Sweeps: A New Approach Based on Hidden Markov Models DOI 10.1534/genetics.108.100032 Typ Journal Article Autor Boitard S Journal Genetics Seiten 1567-1578 Link Publikation -
2011
Titel PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals DOI 10.1371/journal.pone.0015925 Typ Journal Article Autor Kofler R Journal PLoS ONE Link Publikation -
2011
Titel The effects of linkage and gene flow on local adaptation: A two-locus continent–island model DOI 10.1016/j.tpb.2011.07.002 Typ Journal Article Autor Bürger R Journal Theoretical Population Biology Seiten 272-288 Link Publikation -
2013
Titel Genetic and developmental analysis of differences in eye and face morphology between Drosophila simulans and Drosophila mauritiana DOI 10.1111/ede.12027 Typ Journal Article Autor Arif S Journal Evolution & Development Seiten 257-267 Link Publikation -
2013
Titel A Guide for the Design of Evolve and Resequencing Studies DOI 10.1093/molbev/mst221 Typ Journal Article Autor Kofler R Journal Molecular Biology and Evolution Seiten 474-483 Link Publikation -
2013
Titel Linking Great Apes Genome Evolution across Time Scales Using Polymorphism-Aware Phylogenetic Models DOI 10.1093/molbev/mst131 Typ Journal Article Autor De Maio N Journal Molecular Biology and Evolution Seiten 2249-2262 Link Publikation -
2013
Titel A Genome-Wide, Fine-Scale Map of Natural Pigmentation Variation in Drosophila melanogaster DOI 10.1371/journal.pgen.1003534 Typ Journal Article Autor Bastide H Journal PLoS Genetics Link Publikation -
2013
Titel VARIATION IN THERMAL PERFORMANCE AND REACTION NORMS AMONG POPULATIONS OF DROSOPHILA MELANOGASTER DOI 10.1111/evo.12221 Typ Journal Article Autor Klepsatel P Journal Evolution Seiten 3573-3587 -
2013
Titel Inference of chromosomal inversion dynamics from Pool-Seq data in natural and laboratory populations of Drosophila melanogaster DOI 10.1111/mec.12594 Typ Journal Article Autor Kapun M Journal Molecular Ecology Seiten 1813-1827 Link Publikation -
2013
Titel Allelic imbalance metre (Allim), a new tool for measuring allele-specific gene expression with RNA-seq data DOI 10.1111/1755-0998.12110 Typ Journal Article Autor Pandey R Journal Molecular Ecology Resources Seiten 740-745 Link Publikation -
2013
Titel Evolution of mir-92a Underlies Natural Morphological Variation in Drosophila melanogaster DOI 10.1016/j.cub.2013.02.018 Typ Journal Article Autor Arif S Journal Current Biology Seiten 523-528 Link Publikation -
2013
Titel Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden DOI 10.1038/ng.2678 Typ Journal Article Autor Long Q Journal Nature Genetics Seiten 884-890 Link Publikation -
2013
Titel A Perspective on Micro-Evo-Devo: Progress and Potential DOI 10.1534/genetics.113.156463 Typ Journal Article Autor Nunes M Journal Genetics Seiten 625-634 Link Publikation -
2016
Titel Erratum: Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation DOI 10.1038/hdy.2015.85 Typ Journal Article Autor Schlötterer C Journal Heredity Seiten 248-248 Link Publikation -
2016
Titel Reversible polymorphism-aware phylogenetic models and their application to tree inference DOI 10.1016/j.jtbi.2016.07.042 Typ Journal Article Autor Schrempf D Journal Journal of Theoretical Biology Seiten 362-370 Link Publikation -
2016
Titel Computation of the Likelihood of Joint Site Frequency Spectra Using Orthogonal Polynomials DOI 10.3390/computation4010006 Typ Journal Article Autor Vogl C Journal Computation Seiten 6 Link Publikation -
2016
Titel Estimating effective population size from temporal allele frequency changes in experimental evolution DOI 10.1101/051854 Typ Preprint Autor Jónás Á Seiten 051854 Link Publikation -
2016
Titel Ancestral population reconstitution from isofemale lines as a tool for experimental evolution DOI 10.1002/ece3.2402 Typ Journal Article Autor Nouhaud P Journal Ecology and Evolution Seiten 7169-7175 Link Publikation