CATalytic mechanisms and AppLications of OXidoreductases - CATALOX
CATalytic mechanisms and AppLications of OXidoreductases - CATALOX
Disciplines
Biology (50%); Chemistry (50%)
Keywords
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Biocatalysis,
Enzymes,
Reaction Mechanism,
Redox Reactions,
Protein Engineering
Reduction and oxidation (redox) reactions play a pivotal role in nature because of their importance in energy metabolism and the biosynthesis of a plethora of natural products. Similarly, many industrial syntheses leading to a wealth of chemical compounds involve redox reactions. However, many of the currently employed redox reactions require the use of toxic reagents or are economically inefficient. CATALOX will provide an array of cutting edge research projects as well as a solid methodological platform with the aim to set new standards in the understanding and potential utilisation of enzyme catalysed redox reactions. Our faculty combines the highly interdisciplinary research activities of five institutes, i.e. Biochemistry (Macheroux), Biotechnology & Biochemical Engineering (Nidetzky), Molecular Biotechnology (Glieder and Kourist), Process and Particle Engineering (Gruber-Wölfler) and Organic Chemistry (Breinbauer) at the Graz University of Technology and two institutes, i.e. Chemistry (Kroutil) and Molecular Biosciences (Gruber) at the University of Graz and thus represents an internationally recognized consortium in the area of biocatalysis and biotechnology. Furthermore, our aims will be supported by close interactions with the Austrian Centre of Industrial Biotechnology to explore the utility of our scientific discoveries for applications and to link our students with its industrial network of possible future employers and partners. A hallmark of our proposal is the proven close collaboration within our consortium, but equally our engagement with national and international experts to achieve the successful development of fundamental research topics. Our PhD training program will provide an outstanding platform for doctoral students to investigate the catalytic mechanisms and the potential applications of redox enzymes, so-called oxidoreductases, with a focus on challenging reactions. This will ensure that our students have the opportunity to be trained in a variety of competitive and international research environments and thus prepare them for a leading career in research and development. The recruitment and selection process for doctoral students will adhere to international standards to ensure that the best applicants will be admitted to our program. The doctoral students will benefit from a network of mentoring and supervisory instruments throughout their training. Equally important, the students will benefit from a multidisciplinary group of internationally recognized principal investigators and a well-defined set of hypothesis-driven research projects. In this unique and focused research environment, the students will acquire expertise in crucial areas of enzyme catalysis ranging from organic synthesis, mechanistic enzymology, structural biology to process engineering. Thus, our ambitious and competitive program will promote the careers of young scientists, enhance the visibility of biotechnological research in Austria and set the stage for new ground-breaking and innovative basic as well as translational research. 1
The doc.funds initiative CATALOX joint 10 young researchers to investigate the mechanisms and applications of so-called oxidoreductases. These biocatalysts form the largest class of enzymes and play an important role in energy metabolism. The associated doctoral program is part of a collaboration between TU Graz and the University of Graz within the framework program "NaWI Graz". As part of their scientific training, the doctoral students benefited from the international reputation of the participating research group leaders and the focused research projects. The interdisciplinary approach offered the young researchers the opportunity to prepare themselves for attractive career options in research and development. In the dissertation projects, the doctoral students acquired detailed knowledge in key topics of biocatalysis and biotechnology - from organic synthesis, mechanistic enzymology, enzyme engineering, structural biology to process technology. The results of the research range from the isolation of new cold-active oxidoreductases and mechanistic investigations to the establishment of new catalysts for the use of renewable raw materials.
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consortium member (1.10.2019 - 29.2.2024)
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consortium member (1.10.2019 - 29.2.2024)
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consortium member (1.10.2019 - 29.2.2024)
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consortium member (1.10.2019 - 29.2.2024)
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consortium member (1.10.2019 - 29.2.2024)
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consortium member (1.10.2019 - 29.2.2024)
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consortium member (1.10.2019 - 29.2.2024)
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consortium member (1.10.2019 - 29.2.2024)
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consortium member (1.10.2019 - 29.2.2024)
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consortium member (1.10.2019 - 29.2.2024)
- Technische Universität Graz
- Siegfried Waldvogel, Johannes Gutenberg-Universität Mainz - Germany
- Andrea Mattevi, Università degli studi di Pavia - Italy
- Paula Tamagnini, Universidade do Porto - Portugal
- Fahmi Himo, University of Stockholm - Sweden
- Nicholas J. Turner, University of Manchester - United Kingdom
Research Output
- 670 Citations
- 67 Publications
- 6 Disseminations
- 2 Scientific Awards
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2024
Title A multistep (semi)-continuous biocatalytic setup for the production of polycaprolactone DOI 10.1039/d3re00536d Type Journal Article Author Valotta A Journal Reaction Chemistry & Engineering Pages 713-727 Link Publication -
2024
Title Deciphering the Unconventional Reduction of C?N Bonds by Old Yellow Enzymes Using QM/MM DOI 10.1021/acscatal.3c04362 Type Journal Article Author Sahrawat A Journal ACS Catalysis Pages 1257-1266 Link Publication -
2024
Title Cyclic Deracemization of rac-Sulfoxides via Alternating Biocatalytic Reduction and Light-Dependent Oxidation Employing Eosin Y as Photocatalyst DOI 10.1002/cctc.202400073 Type Journal Article Author Bierbaumer S Journal ChemCatChem Link Publication -
2024
Title Loop 6 and the ß-hairpin flap are structural hotspots that determine cofactor specificity in the FMN-dependent family of ene-reductases DOI 10.1111/febs.17055 Type Journal Article Author Kerschbaumer B Journal The FEBS Journal Pages 1560-1574 Link Publication -
2024
Title Analysis of homodimer formation in 12-oxophytodienoate reductase 3 in solutio and crystallo challenges the physiological role of the dimer DOI 10.1038/s41598-024-69160-6 Type Journal Article Author Kerschbaumer B Journal Scientific Reports Pages 18093 Link Publication -
2024
Title Enzyme Machinery for Bacterial Glucoside Metabolism through a Conserved Non-hydrolytic Pathway DOI 10.1002/anie.202410681 Type Journal Article Author Kastner K Journal Angewandte Chemie International Edition Link Publication -
2024
Title Old Yellow Enzymes as Oxime Reductases: New Variants by Substrate-Based Enzyme Engineering DOI 10.1002/cctc.202400642 Type Journal Article Author Polidori N Journal ChemCatChem Link Publication -
2024
Title Coupling photocatalytic trifluoromethylation with biocatalytic stereoselective ketone reduction in continuous flow DOI 10.1007/s11696-024-03649-2 Type Journal Article Author Valotta A Journal Chemical Papers Pages 7973-7986 Link Publication -
2024
Title Structural investigation of Trypanosoma cruzi Akt-like kinase as drug target against Chagas disease DOI 10.1038/s41598-024-59654-8 Type Journal Article Author Stadler K Journal Scientific Reports Pages 10039 Link Publication -
2024
Title Asymmetric Synthesis of Chiral 2-Cyclohexenones with Quaternary Stereocenters via Ene-Reductase Catalyzed Desymmetrization of 2,5-Cyclohexadienones DOI 10.1021/acscatal.4c00276 Type Journal Article Author Friess M Journal ACS Catalysis Pages 7256-7266 Link Publication -
2024
Title Investigation of the Substrate Acceptance of Decarboxylative Enzymes Type PhD Thesis Author Bauer, Kristin -
2024
Title Biochemical and structural studies on selected flavoenzymes Type PhD Thesis Author Kerschbaumer, Bianca -
2024
Title Multistep (bio)catalytic cascade reactions in continuous flow Type PhD Thesis Author Valotta, Alessia -
2024
Title Investigation of Non-natural Ene-reductase Catalyzed Reactions Type PhD Thesis Author Friess, Michael -
2023
Title Enzymatic ß-elimination in natural product O- and C-glycoside deglycosylation DOI 10.1038/s41467-023-42750-0 Type Journal Article Author Bitter J Journal Nature Communications Pages 7123 Link Publication -
2022
Title Structural bioinformatics analysis of SARS-CoV-2 variants reveals higher hACE2 receptor binding affinity for Omicron B.1.1.529 spike RBD compared to wild type reference DOI 10.1038/s41598-022-18507-y Type Journal Article Author Durmaz V Journal Scientific Reports Pages 14534 Link Publication -
2022
Title Synthesis of Enantiopure Sulfoxides by Concurrent Photocatalytic Oxidation and Biocatalytic Reduction DOI 10.1002/anie.202117103 Type Journal Article Author Bierbaumer S Journal Angewandte Chemie International Edition Link Publication -
2022
Title Regioselective Biocatalytic C4-Prenylation of Unprotected Tryptophan Derivatives DOI 10.1002/cbic.202200311 Type Journal Article Author Eggbauer B Journal ChemBioChem Link Publication -
2022
Title Transmembrane Shuttling of Photosynthetically Produced Electrons to Propel Extracellular Biocatalytic Redox Reactions in a Modular Fashion DOI 10.1002/ange.202207971 Type Journal Article Author Jurkaš V Journal Angewandte Chemie Link Publication -
2022
Title Transmembrane Shuttling of Photosynthetically Produced Electrons to Propel Extracellular Biocatalytic Redox Reactions in a Modular Fashion DOI 10.1002/anie.202207971 Type Journal Article Author Jurkaš V Journal Angewandte Chemie International Edition Link Publication -
2022
Title Photobiocatalysis in Continuous Flow DOI 10.3389/fctls.2021.816538 Type Journal Article Author Chanquia S Journal Frontiers in Catalysis Pages 816538 Link Publication -
2022
Title Optimizing variant-specific therapeutic SARS-CoV-2 decoys using deep-learning-guided molecular dynamic simulations. DOI 10.21203/rs.3.rs-1971184/v1 Type Preprint Author Koechl K Link Publication -
2022
Title More enzymes more opportunities for oxyfunctionalization: Sixty novel unspecific peroxygenases for biocatalysis Type Other Author Pichler C. Conference Pichia 2022 -
2022
Title More enzymes more opportunities for oxyfunctionalization: Sixty novel unspecific peroxygenases for biocatalysis Type Other Author Pichler C. Conference European Summit of Industrial Biotechnology 2022 (ESIB 2022) -
2022
Title More enzymes more opportunities for oxyfunctionalization: Sixty novel unspecific peroxygenases for biocatalysis Type Other Author Novak K. Conference Summer School Biotransformations 2022 -
2022
Title Flavofun: Exploration of fungal flavoproteomes DOI 10.3389/fctls.2022.1021691 Type Journal Article Author Kerschbaumer B Journal Frontiers in Catalysis Pages 1021691 Link Publication -
2022
Title Structure of the Reductase Domain of a Fungal Carboxylic Acid Reductase and Its Substrate Scope in Thioester and Aldehyde Reduction DOI 10.1021/acscatal.2c04426 Type Journal Article Author Daniel B Journal ACS Catalysis Pages 15668-15674 Link Publication -
2022
Title From linoleic acid to hexanal and hexanol by whole cell catalysis with a lipoxygenase, hydroperoxide lyase and reductase cascade in Komagataella phaffii DOI 10.3389/fmolb.2022.965315 Type Journal Article Author Hashem C Journal Frontiers in Molecular Biosciences Pages 965315 Link Publication -
2022
Title Recent changes in the mutational dynamics of the SARS-CoV-2 main protease substantiate the danger of emerging resistance to antiviral drugs DOI 10.3389/fmed.2022.1061142 Type Journal Article Author Krassnigg A Journal Frontiers in Medicine -
2021
Title The scope of flavin-dependent reactions and processes in the model plant Arabidopsis thaliana DOI 10.1016/j.phytochem.2021.112822 Type Journal Article Author Eggers R Journal Phytochemistry Pages 112822 Link Publication -
2021
Title The role of biocatalysis in the asymmetric synthesis of alkaloids – an update DOI 10.1039/d1ra04181a Type Journal Article Author Cigan E Journal RSC Advances Pages 28223-28270 Link Publication -
2020
Title Secretion of Pseudomonas aeruginosa Lipoxygenase by Pichia pastoris upon Glycerol Feed DOI 10.1002/biot.202000089 Type Journal Article Author Hashem C Journal Biotechnology Journal Link Publication -
2020
Title C?C-Ene-Reductases Reduce the C?N Bond of Oximes DOI 10.1021/acscatal.0c03755 Type Journal Article Author Velikogne S Journal ACS Catalysis Pages 13377-13382 Link Publication -
2020
Title Pyrazines: Synthesis and Industrial Application of these Valuable Flavor and Fragrance Compounds DOI 10.1002/biot.202000064 Type Journal Article Author Mortzfeld F Journal Biotechnology Journal Pages 2000064 Link Publication -
2023
Title Optimizing variant-specific therapeutic SARS-CoV-2 decoys using deep-learning-guided molecular dynamics simulations DOI 10.1038/s41598-023-27636-x Type Journal Article Author Köchl K Journal Scientific Reports Pages 774 Link Publication -
2023
Title Reduction of Oximes by Old-Yellow-Enzymes: Structures of Substrate Complexes and Enzyme Engineering Type PhD Thesis Author Polidori, Nakia -
2023
Title Biocatalyitc Reduction of Oximes Using Ene-Reductases: Substrate Scope, Cascades and Mechanism Type PhD Thesis Author Breukelaar, Willem B. -
2023
Title Synthesis of Enantiopure Sulfoxides by Combination of Photo- and Biocatalysis Type PhD Thesis Author Bierbaumer, Sarah -
2023
Title Simulating Biomolecular Interactions Across Scales - From Electrons to Macromolecules Type PhD Thesis Author Sahrawat, Amit Singh -
2023
Title Transformations of Indole Derivatives to Build Multi-Enzymatic Sequences Combined with Classic Organic Synthesis towards Chanoclavine-I Type PhD Thesis Author Eggbauer, Bettina -
2023
Title Enzymatic Conversion of CO2: From Natural to Artificial Utilization DOI 10.1021/acs.chemrev.2c00581 Type Journal Article Author Bierbaumer S Journal Chemical Reviews Pages 5702-5754 Link Publication -
2023
Title Mechanistic Insights into the Ene-Reductase-Catalyzed Promiscuous Reduction of Oximes to Amines DOI 10.1021/acscatal.2c06137 Type Journal Article Author Breukelaar W Journal ACS Catalysis Pages 2610-2618 Link Publication -
2023
Title A chromosome-level genome assembly for Erianthus fulvus provides insights into its biofuel potential and facilitates breeding for improvement of sugarcane DOI 10.1016/j.xplc.2023.100562 Type Journal Article Author Kui L Journal Plant Communications Pages 100562 Link Publication -
2021
Title Chromoselective Photocatalysis Enables Stereocomplementary Biocatalytic Pathways** DOI 10.1002/ange.202100164 Type Journal Article Author Schmermund L Journal Angewandte Chemie Pages 7041-7045 Link Publication -
2021
Title Chromoselective Photocatalysis Enables Stereocomplementary Biocatalytic Pathways** DOI 10.1002/anie.202100164 Type Journal Article Author Schmermund L Journal Angewandte Chemie International Edition Pages 6965-6969 Link Publication -
2021
Title Serine 477 plays a crucial role in the interaction of the SARS-CoV-2 spike protein with the human receptor ACE2 DOI 10.1038/s41598-021-83761-5 Type Journal Article Author Singh A Journal Scientific Reports Pages 4320 Link Publication -
2021
Title Switching Between Enantiomers by Combining Chromoselective Photocatalysis and Biocatalysis DOI 10.26434/chemrxiv.13521527.v1 Type Preprint Author Schmermund L Link Publication -
2021
Title Switching Between Enantiomers by Combining Chromoselective Photocatalysis and Biocatalysis DOI 10.26434/chemrxiv.13521527 Type Preprint Author Schmermund L Link Publication -
2021
Title 3D printed ceramics as solid supports for enzyme immobilization: an automated DoE approach for applications in continuous flow DOI 10.1007/s41981-021-00163-4 Type Journal Article Author Valotta A Journal Journal of Flow Chemistry Pages 675-689 Link Publication -
2019
Title Valorization of Fatty Acids by Pichia pastoris: A Fresh Approach for Green Leaf Volatile Synthesis Type Other Author Hashem C. Conference International Congress of the Malaysian Society for Microbiology 2019 (ICMSM2019) -
2019
Title Goodbye methanol induction: Secretion of Pseudomonas aeruginosa lipoxygenase by Pichia pastoris upon glycerol feed Type Other Author Hashem C. Conference European Summit of Industrial Biotechnology -
2021
Title Characterization and immobilization of Pycnoporus cinnabarinus carboxylic acid reductase, PcCAR2 DOI 10.1016/j.jbiotec.2021.12.010 Type Journal Article Author Maphatsoe M Journal Journal of Biotechnology Pages 47-54 Link Publication -
2021
Title Characterization and Immobilization of Pycnoporous cinnabarinus Carboxylic Acid Reductase - A Prospective Reusable Biocatalyst Type Other Author Hashem C. Conference Biotrans 2021 -
2021
Title Approaching an Efficient System for Green Leaf Volatile Synthesis. Type Other Author Hashem C. Conference Next Generation Biocatalysis - An International Young Investigator Virtual Symposium -
2021
Title Reduction Domain of Carboxylic Acid Reductase - A New Insight into Fungal CARs Type Other Author Daniel B. Conference 23rd DocDays -
2020
Title Inverted Binding of Non-natural Substrates in Strictosidine Synthase Leads to a Switch of Stereochemical Outcome in Enzyme-Catalyzed Pictet–Spengler Reactions DOI 10.1021/jacs.9b08704 Type Journal Article Author Eger E Journal Journal of the American Chemical Society Pages 792-800 Link Publication -
2023
Title A community effort in SARS-CoV-2 drug discovery DOI 10.1002/minf.202300262 Type Journal Article Author Schimunek J Journal Molecular Informatics -
2023
Title More enzymes more opportunities for oxyfunctionalization: Sixty novel unspecific peroxygenases for biocatalysis Type Other Author Pichler C. Conference 3rd NextGenBiocat 2023 -
2023
Title A Magic Piece of Short Unspecific Peroxygenases? - A Surface Alpha Helix as Key Part for Catalytic Specificity Type Other Author Holzschuster V. Conference Biotrans 2023: 16th International Symposium on Biocatalysis & Biotransformations -
2023
Title Laboratory evolution of a fungal unspecific peroxygenase to elucidate the structural and functional relationship Type Other Author Holzschuster V. Conference Enzyme Engineering XXVII -
2023
Title Laboratory evolution of fungal heme-thiolate enzymes employing Komagataella phaffii as a host system Type Other Author Holzschuster V. Conference 11th Conference on Recombinant Protein Production: RPP 2023 -
2020
Title Towards the Quantification of Phosphopantetheinylation - Scouting for Activated Carboxylic Acid Reductase Type Other Author Hashem C. Conference ÖGMBT Life Science -
2020
Title Engineering of NADPH Supply Boosts Photosynthesis-Driven Biotransformations DOI 10.1021/acscatal.0c02601 Type Journal Article Author Assil-Companioni L Journal ACS Catalysis Pages 11864-11877 Link Publication -
0
Title Novel unspecific peroxygenases for hydroxylation of heterocyclic molecules Type PhD Thesis Author Pichler, Carsten -
0
Title Oxidation-reduction driven multi-step transformation in sugar metabolism and synthesis: mechanism and application Type PhD Thesis Author Bitter, Johannes -
0
Title Novel biocatalysts for the hydroxylation of heterocyclic compounds Type PhD Thesis Author Peces Perez, Rosa Maria -
0
Title Systematic investigation towards exhaustive post-translational modification of carboxylate reductases Type PhD Thesis Author Hashem, Chiam
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2020
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Title Announcement of scientific results on TU Graz website Type A press release, press conference or response to a media enquiry/interview Link Link -
2020
Link
Title Article in national news on cyanobacteria as environmentally-friendly catalysts Type A magazine, newsletter or online publication Link Link -
2020
Title Educational video "Cupriavidus example" Type A talk or presentation -
2020
Link
Title Engineering of NADPH Supply Boosts Photosynthesis-Driven Biotransformations Type Engagement focused website, blog or social media channel Link Link -
2020
Link
Title NADPH-availability is a limiting factor for photobiocatalytic biotransformations Type A talk or presentation Link Link -
2021
Link
Title Photosynthesis-driven biocatalytic redox reactions Type A talk or presentation Link Link
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2022
Title NextGenBiocat 2022/Delft Type Poster/abstract prize Level of Recognition Continental/International -
2021
Title Vincent Massey Award Type Research prize Level of Recognition Continental/International